PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028027-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family M-type_MADS
Protein Properties Length: 210aa    MW: 24509.8 Da    PI: 6.05
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028027-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.81.2e-222670549
                        SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        ++s++qvtfskRr+g++KKA EL+vLC+aeva+i+fs++++++ +
  WALNUT_00028027-RA 26 EESKKQVTFSKRRAGLFKKAGELCVLCGAEVAIIVFSPHNNVFCF 70
                        6799************************************99866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.321474IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-271473IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-261592IPR002100Transcription factor, MADS-box
CDDcd002651.45E-311586No hitNo description
PRINTSPR004045.0E-181636IPR002100Transcription factor, MADS-box
PfamPF003192.2E-222670IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-183651IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-185172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVIQKKMSEG KKTRGRQRIE IKELAEESKK QVTFSKRRAG LFKKAGELCV LCGAEVAIIV  60
FSPHNNVFCF GHPDVETVLD HYLTGNHSSF SHTSSSDLHD QNLNNLNNVA AAELMNRQYA  120
EAQEELGREK KRLVEIEEEV KRKKMENNGE YLWWEEAVHE NMELEEMEHY MSALQEMRWK  180
VGSRLEQFRM MRSATHDDAC AWDSWETMLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3p57_J1e-161595181Myocyte-specific enhancer factor 2A
3p57_I1e-161595181Myocyte-specific enhancer factor 2A
3p57_D1e-161595181Myocyte-specific enhancer factor 2A
3p57_C1e-161595181Myocyte-specific enhancer factor 2A
3p57_B1e-161595181Myocyte-specific enhancer factor 2A
3p57_A1e-161595181Myocyte-specific enhancer factor 2A
3kov_J1e-161595181Myocyte-specific enhancer factor 2A
3kov_I1e-161595181Myocyte-specific enhancer factor 2A
3kov_B1e-161595181Myocyte-specific enhancer factor 2A
3kov_A1e-161595181Myocyte-specific enhancer factor 2A
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129143KKRLVEIEEEVKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007219778.11e-51hypothetical protein PRUPE_ppa024464mg
TrEMBLM5X4K91e-51M5X4K9_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-33AGAMOUS-like 61